Glyma14g07940 - SoyBase

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Report for Sequence Feature Glyma14g07940

Feature Type:	gene_model
Chromosome:	Gm14
Start:	6000488
stop:	6004812
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g07940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42800	AT	Annotation by Michelle Graham. TAIR10: dihydroflavonol 4-reductase \| chr5:17164296-17165864 REVERSE LENGTH=382	SoyBase	E_val: 1.00E-177	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0042406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0045552	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrokaempferol 4-reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_Q9SPJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Dihydroflavonol-4-reductase DFR1 n=1 Tax=Glycine max RepID=Q9SPJ5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SPJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase DFR1 n=1 Tax=Glycine max RepID=Q9SPJ5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma14g07940

Locus	Gene Symbol	Protein Name
W3	DHFR1	dihydroflavonol-4-reductase 1
W3	W3	White flower 3

Expression Patterns of Glyma14g07940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g07940

Paralog	Evidence	Comments
Glyma17g37060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g07940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g072700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g07940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g07940

Limit To All Plant Sequences

>Glyma14g07940.1   sequence type=CDS   gene model=Glyma14g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAGCATCCGAAAGTGTTTGCGTTACAGGAGCTTCTGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATCGAGCGTGGCTACACCGTTCGAGCCACCGTACGCGACCCAGTAAACATGAAGAAGGTGAAGCATTTGGTGGAACTACCAGGCGCAAAGAGCAAACTGTCTCTGTGGAAGGCTGATCTTGCTGAAGAGGGAAGCTTTGATGAAGCCATTAAAGGCTGCACCGGAGTTTTCCACGTGGCCACCCCCATGGACTTTGAATCCAAAGACCCTGAGAATGAAGTGATAAAGCCTACAATAAATGGGGTACTAGACATCATGAAAGCATGCTTGAAGGCAAAAACTGTGCGAAGGCTAATATTCACGTCCTCAGCCGGAACCCTCAACGTTATTGAGCGCCAAAAGCCCGTTTTCGACGACACATGCTGGAGTGACGTTGAGTTTTGCCGTAGAGTTAAGATGACTGGTTGGATGTATTTTGTTTCTAAAACACTGGCGGAGAAAGAAGCATGGAAATTTGCCAAAGAGCAGGGCCTGGACTTCATCACTATCATTCCACCTCTTGTTGTCGGTCCCTTTCTGATGCCAACCATGCCACCTAGCCTAATCACGGCTCTATCGCCAATCACAGGAAATGAGGACCATTACTCGATCATAAAGCAAGGTCAATTCGTCCACTTAGATGATCTCTGTCTTGCTCACATATTTCTGTTTGAGGAACCAGAAGTGGAAGGGAGGTACATATGCAGTGCATGTGACGCTACCATTCATGACATTGCCAAATTAATTAACCAAAAATACCCTGAGTACAAGGTCCCCACCAAGTTCAAGAATATTCCAGATCAATTGGAGCTTGTGAGATTTTCTTCCAAGAAGATCACAGACTTGGGATTCAAATTTAAATACAGCTTAGAGGACATGTACACTGGAGCAATTGACACATGCAGAGACAAAGGGCTTCTTCCGAAACCTGCAGAAAAAGGGCTTTTTACTAAACCTGCAGAAACTCCAGTGAATGCCATCATGCATAAATAG

Predicted protein sequences of Glyma14g07940

Limit To All Plant Sequences

>Glyma14g07940.1   sequence type=predicted peptide   gene model=Glyma14g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSASESVCVTGASGFIGSWLVMRLIERGYTVRATVRDPVNMKKVKHLVELPGAKSKLSLWKADLAEEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTINGVLDIMKACLKAKTVRRLIFTSSAGTLNVIERQKPVFDDTCWSDVEFCRRVKMTGWMYFVSKTLAEKEAWKFAKEQGLDFITIIPPLVVGPFLMPTMPPSLITALSPITGNEDHYSIIKQGQFVHLDDLCLAHIFLFEEPEVEGRYICSACDATIHDIAKLINQKYPEYKVPTKFKNIPDQLELVRFSSKKITDLGFKFKYSLEDMYTGAIDTCRDKGLLPKPAEKGLFTKPAETPVNAIMHK*

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